PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT23972
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 103aa    MW: 11103.2 Da    PI: 5.7154
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT23972genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.4e-08448344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    + + da +++ ++   +W  +ar++g g++ +++k ++
         EMT23972  4 SWTFKQNKVFEDALAKYDKDapdRWQNVAREVGDGKSVEDVKKHF 48
                     7*******************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.706156IPR017884SANT domain
SMARTSM007172.0E-5154IPR001005SANT/Myb domain
SuperFamilySSF466893.93E-10355IPR009057Homeodomain-like
PfamPF002491.8E-5448IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MSSSWTFKQN KVFEDALAKY DKDAPDRWQN VAREVGDGKS VEDVKKHFAE LEKDVDEIHT  60
NGAGSSSNNT KGGSSRGGSS DGQRYLCSLA NVVALTPLPL LGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-165851187RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519213e-90JF951921.1 Aegilops speltoides clone TaMYB38 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627078.13e-25PREDICTED: protein RADIALIS-like 3 isoform X2
RefseqXP_015627079.13e-25PREDICTED: protein RADIALIS-like 3 isoform X2
RefseqXP_015627080.13e-25PREDICTED: protein RADIALIS-like 3 isoform X2
RefseqXP_015627081.13e-25PREDICTED: protein RADIALIS-like 3 isoform X2
RefseqXP_015627082.13e-25PREDICTED: protein RADIALIS-like 3 isoform X2
RefseqXP_015627083.13e-25PREDICTED: protein RADIALIS-like 3 isoform X2
RefseqXP_015627085.13e-25PREDICTED: protein RADIALIS-like 3 isoform X2
RefseqXP_015627086.13e-25PREDICTED: protein RADIALIS-like 3 isoform X2
RefseqXP_015627087.13e-25PREDICTED: protein RADIALIS-like 3 isoform X2
RefseqXP_015627088.13e-25PREDICTED: protein RADIALIS-like 3 isoform X2
RefseqXP_015627089.13e-25PREDICTED: protein RADIALIS-like 3 isoform X2
RefseqXP_015627090.13e-25PREDICTED: protein RADIALIS-like 3 isoform X2
RefseqXP_015627091.13e-25PREDICTED: protein RADIALIS-like 3 isoform X2
RefseqXP_015693803.12e-25PREDICTED: protein RADIALIS-like 3
TrEMBLM8CA771e-71M8CA77_AEGTA; Uncharacterized protein
STRINGBGIOSGA008889-PA8e-25(Oryza sativa Indica Group)
STRINGORGLA02G0253100.18e-25(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-20RAD-like 6